The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark."

Related tags

Deep LearningFFA-IR
Overview

FFA-IR

The official start-up code for paper "FFA-IR: Towards an Explainable and Reliable Medical Report Generation Benchmark."

The framework is inherited from R2Gen.

Data

Our dataset, including all FFA images and annotation files, is available on PhysioNet.

To extract all the files, please first download all the files in FFAIR, and use the command "cat FAIR.tar.gz.* | tar -zxv". Then the name of each directory refers to the case ID, and all the FFA images are provided.

Please put the data and annotation files in 'code/data' directory. Or you can change the code in main.py to fit your own condition.

Requirements

  • torch==1.5.1
  • torchvision==0.6.1
  • opencv-python==4.4.0.42

Training

You can directly run our code by the following:

python main.py

Contact

If you are interested in this dataset or have any questions, please connect us: [email protected].

Owner
Mingjie
Ph.D. Candidate in Monash University
Mingjie
A collection of semantic image segmentation models implemented in TensorFlow

A collection of semantic image segmentation models implemented in TensorFlow. Contains data-loaders for the generic and medical benchmark datasets.

bobby 16 Dec 06, 2019
Tgbox-bench - Simple TGBOX upload speed benchmark

TGBOX Benchmark This script will benchmark upload speed to TGBOX storage. Build

Non 1 Jan 09, 2022
Official implementation for the paper "SAPE: Spatially-Adaptive Progressive Encoding for Neural Optimization".

SAPE Project page Paper Official implementation for the paper "SAPE: Spatially-Adaptive Progressive Encoding for Neural Optimization". Environment Cre

36 Dec 09, 2022
Kaggle Ultrasound Nerve Segmentation competition [Keras]

Ultrasound nerve segmentation using Keras (1.0.7) Kaggle Ultrasound Nerve Segmentation competition [Keras] #Install (Ubuntu {14,16}, GPU) cuDNN requir

179 Dec 28, 2022
Wav2Vec for speech recognition, classification, and audio classification

Soxan در زبان پارسی به نام سخن This repository consists of models, scripts, and notebooks that help you to use all the benefits of Wav2Vec 2.0 in your

Mehrdad Farahani 140 Dec 15, 2022
This is a code repository for paper OODformer: Out-Of-Distribution Detection Transformer

OODformer: Out-Of-Distribution Detection Transformer This repo is the official the implementation of the OODformer: Out-Of-Distribution Detection Tran

34 Dec 02, 2022
Reviving Iterative Training with Mask Guidance for Interactive Segmentation

This repository provides the source code for training and testing state-of-the-art click-based interactive segmentation models with the official PyTorch implementation

Visual Understanding Lab @ Samsung AI Center Moscow 406 Jan 01, 2023
Keras udrl - Keras implementation of Upside Down Reinforcement Learning

keras_udrl Keras implementation of Upside Down Reinforcement Learning This is me

Eder Santana 7 Jan 24, 2022
Vision Transformer for 3D medical image registration (Pytorch).

ViT-V-Net: Vision Transformer for Volumetric Medical Image Registration keywords: vision transformer, convolutional neural networks, image registratio

Junyu Chen 192 Dec 20, 2022
PiCIE: Unsupervised Semantic Segmentation using Invariance and Equivariance in clustering (CVPR2021)

PiCIE: Unsupervised Semantic Segmentation using Invariance and Equivariance in Clustering Jang Hyun Cho1, Utkarsh Mall2, Kavita Bala2, Bharath Harihar

Jang Hyun Cho 164 Dec 30, 2022
This is implementation of AlexNet(2012) with 3D Convolution on TensorFlow (AlexNet 3D).

AlexNet_3dConv TensorFlow implementation of AlexNet(2012) by Alex Krizhevsky, with 3D convolutiional layers. 3D AlexNet Network with a standart AlexNe

Denis Timonin 41 Jan 16, 2022
A pre-trained language model for social media text in Spanish

RoBERTuito A pre-trained language model for social media text in Spanish READ THE FULL PAPER Github Repository RoBERTuito is a pre-trained language mo

25 Dec 29, 2022
Scalable Attentive Sentence-Pair Modeling via Distilled Sentence Embedding (AAAI 2020) - PyTorch Implementation

Scalable Attentive Sentence-Pair Modeling via Distilled Sentence Embedding PyTorch implementation for the Scalable Attentive Sentence-Pair Modeling vi

Microsoft 25 Dec 02, 2022
Simulation environments for the CrazyFlie quadrotor: Used for Reinforcement Learning and Sim-to-Real Transfer

Phoenix-Drone-Simulation An OpenAI Gym environment based on PyBullet for learning to control the CrazyFlie quadrotor: Can be used for Reinforcement Le

Sven Gronauer 8 Dec 07, 2022
Implementing a simplified copy of Shazam application from scratch using MinHashing and LSH.

Building Shazam from scratch In this repository we tried to implement a simplified copy of the Shazam application able to tell you the name of a song

Arturo Ghinassi 0 Nov 17, 2022
Contrastively Disentangled Sequential Variational Audoencoder

Contrastively Disentangled Sequential Variational Audoencoder (C-DSVAE) Overview This is the implementation for our C-DSVAE, a novel self-supervised d

Junwen Bai 35 Dec 24, 2022
Official Code Release for "CLIP-Adapter: Better Vision-Language Models with Feature Adapters"

Official Code Release for "CLIP-Adapter: Better Vision-Language Models with Feature Adapters" Pipeline of CLIP-Adapter CLIP-Adapter is a drop-in modul

peng gao 157 Dec 26, 2022
Metric learning algorithms in Python

metric-learn: Metric Learning in Python metric-learn contains efficient Python implementations of several popular supervised and weakly-supervised met

1.3k Jan 02, 2023
Improving Transferability of Representations via Augmentation-Aware Self-Supervision

Improving Transferability of Representations via Augmentation-Aware Self-Supervision Accepted to NeurIPS 2021 TL;DR: Learning augmentation-aware infor

hankook 38 Sep 16, 2022
Uses Open AI Gym environment to create autonomous cryptocurrency bot to trade cryptocurrencies.

Crypto_Bot Uses Open AI Gym environment to create autonomous cryptocurrency bot to trade cryptocurrencies. Steps to get started using the bot: Sign up

21 Oct 03, 2022