DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Last update: Dec 09, 2022

Related tags

Deep Learning DCSAU-Net

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

By Qing Xu, Wenting Duan and Na He

Requirements

pytorch==1.10.0
pytorch-lightning==1.1.0
albumentations==0.3.2
seaborn
sklearn

Dataset

To apply the model on a custom dataset, the data tree should be constructed as:

    ├── data
          ├── images
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png
          ├── masks
                ├── image_1.png
                ├── image_2.png
                ├── image_n.png

CSV generation

python data_split_csv.py --dataset your/data/path --size 0.9

Train

python train.py --dataset your/data/path --csvfile your/csv/path --loss dice --batch 16 --lr 0.001 --epoch 150

Evaluation

python eval_binary.py --dataset your/data/path --csvfile your/csv/path --model save_models/epoch_last.pth --debug True

Acknowledgement

The codes are modified from ResNeSt, U-Net

Owner

Qing Xu

GitHub Repository

A big endian Gentoo port developed on a Pine64.org RockPro64

Gentoo-aarch64_be A big endian Gentoo port developed on a Pine64.org RockPro64 The endian wars are over... little endian won. As a result, it is incre

6 Dec 07, 2022

Automated Melanoma Recognition in Dermoscopy Images via Very Deep Residual Networks

Introduction This repository contains the modified caffe library and network architectures for our paper "Automated Melanoma Recognition in Dermoscopy

47 Nov 24, 2022

code for "Self-supervised edge features for improved Graph Neural Network training",

Self-supervised edge features for improved Graph Neural Network training Data availability: Here is a link to the raw data for the organoids dataset.

23 Dec 02, 2022

Robust and Accurate Object Detection via Self-Knowledge Distillation

Robust and Accurate Object Detection via Self-Knowledge Distillation paper:https://arxiv.org/abs/2111.07239 Environments Python 3.7 Cuda 10.1 Prepare

6 Jul 01, 2022

Official implementation for the paper: Permutation Invariant Graph Generation via Score-Based Generative Modeling

Permutation Invariant Graph Generation via Score-Based Generative Modeling This repo contains the official implementation for the paper Permutation In

64 Dec 29, 2022

🛠 All-in-one web-based IDE specialized for machine learning and data science.

All-in-one web-based development environment for machine learning Getting Started • Features & Screenshots • Support • Report a Bug • FAQ • Known Issu

2.9k Jan 09, 2023

Code for the paper "Curriculum Dropout", ICCV 2017

Curriculum Dropout Dropout is a very effective way of regularizing neural networks. Stochastically "dropping out" units with a certain probability dis

21 Jan 02, 2022

MPI-IS Mesh Processing Library

Perceiving Systems Mesh Package This package contains core functions for manipulating meshes and visualizing them. It requires Python 3.5+ and is supp

494 Jan 06, 2023

:hot_pepper: R²SQL: "Dynamic Hybrid Relation Network for Cross-Domain Context-Dependent Semantic Parsing." (AAAI 2021)

R²SQL The PyTorch implementation of paper Dynamic Hybrid Relation Network for Cross-Domain Context-Dependent Semantic Parsing. (AAAI 2021) Requirement

60 Dec 31, 2022

Codes for paper "KNAS: Green Neural Architecture Search"

KNAS Codes for paper "KNAS: Green Neural Architecture Search" KNAS is a green (energy-efficient) Neural Architecture Search (NAS) approach. It contain

90 Dec 22, 2022

Making self-supervised learning work on molecules by using their 3D geometry to pre-train GNNs. Implemented in DGL and Pytorch Geometric.

3D Infomax improves GNNs for Molecular Property Prediction Video | Paper We pre-train GNNs to understand the geometry of molecules given only their 2D

95 Dec 30, 2022

Repositorio de los Laboratorios de Análisis Numérico / Análisis Numérico I de FAMAF, UNC.

Repositorio de los Laboratorios de Análisis Numérico / Análisis Numérico I de FAMAF, UNC. Para los Laboratorios de la materia, vamos a utilizar el len

18 Dec 12, 2022

Official code for paper "Demystifying Local Vision Transformer: Sparse Connectivity, Weight Sharing, and Dynamic Weight"

Demysitifing Local Vision Transformer, arxiv This is the official PyTorch implementation of our paper. We simply replace local self attention by (dyna

138 Dec 28, 2022

AquaTimer - Programmable Timer for Aquariums based on ATtiny414/814/1614

AquaTimer - Programmable Timer for Aquariums based on ATtiny414/814/1614 AquaTimer is a programmable timer for 12V devices such as lighting, solenoid

4 Jun 13, 2022

3rd place solution for the Weather4cast 2021 Stage 1 Challenge

weather4cast2021_Stage1 3rd place solution for the Weather4cast 2021 Stage 1 Challenge Dependencies The code can be executed from a fresh environment

5 Aug 14, 2022

Implementation of the paper All Labels Are Not Created Equal: Enhancing Semi-supervision via Label Grouping and Co-training

SemCo The official pytorch implementation of the paper All Labels Are Not Created Equal: Enhancing Semi-supervision via Label Grouping and Co-training

42 Nov 14, 2022

Source code for paper "Document-Level Relation Extraction with Adaptive Thresholding and Localized Context Pooling", AAAI 2021

ATLOP Code for AAAI 2021 paper Document-Level Relation Extraction with Adaptive Thresholding and Localized Context Pooling. If you make use of this co

146 Nov 29, 2022

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Related tags

Overview

DCSAU-Net: A Deeper and More Compact Split-Attention U-Net for Medical Image Segmentation

Requirements

Dataset

CSV generation

Train

Evaluation

Acknowledgement

Owner

Qing Xu

A big endian Gentoo port developed on a Pine64.org RockPro64

Automated Melanoma Recognition in Dermoscopy Images via Very Deep Residual Networks

code for "Self-supervised edge features for improved Graph Neural Network training",

Robust and Accurate Object Detection via Self-Knowledge Distillation

Official implementation for the paper: Permutation Invariant Graph Generation via Score-Based Generative Modeling

🛠 All-in-one web-based IDE specialized for machine learning and data science.

Code for the paper "Curriculum Dropout", ICCV 2017

MPI-IS Mesh Processing Library

:hot_pepper: R²SQL: "Dynamic Hybrid Relation Network for Cross-Domain Context-Dependent Semantic Parsing." (AAAI 2021)

Codes for paper "KNAS: Green Neural Architecture Search"

Making self-supervised learning work on molecules by using their 3D geometry to pre-train GNNs. Implemented in DGL and Pytorch Geometric.

Repositorio de los Laboratorios de Análisis Numérico / Análisis Numérico I de FAMAF, UNC.

Official code for paper "Demystifying Local Vision Transformer: Sparse Connectivity, Weight Sharing, and Dynamic Weight"

AquaTimer - Programmable Timer for Aquariums based on ATtiny414/814/1614

3rd place solution for the Weather4cast 2021 Stage 1 Challenge

Implementation of the paper All Labels Are Not Created Equal: Enhancing Semi-supervision via Label Grouping and Co-training

AI pipelines for Nvidia Jetson Platform

Pytorch tutorials for Neural Style transfert

Multiview Dataset Toolkit

Source code for paper "Document-Level Relation Extraction with Adaptive Thresholding and Localized Context Pooling", AAAI 2021