I am trying to run TagLab on a brand new installation of Windows 10 running Python 3.7.9 and CUDA 10.2. I have tried removing an reinstalling all packages to no avail. Install.py runs fine. When running TagLab.py I get:

Traceback (most recent call last): File "TagLab.py", line 34, in from PyQt5.QtCore import Qt, QSize, QMargins, QDir, QPoint, QPointF, QRectF, QTimer, pyqtSlot, pyqtSignal, QSettings, QFileInfo, QModelIndex ImportError: DLL load failed: The specified module could not be found.

I have tried separately install PyQt5 and have tried version 5.15.7 as well as 5.15.6. I can find the .dll files for PyQt5 and have added their location to my PCs path, but I still get the DLL load failure.

Thank you, Chris

After the update, cannot open TagLab again and it shows up:

Traceback (most recent call last): File "taglab.py", line 78, in from source.NewDataset import NewDataset File "C:\Users\user\OneDrive\Documents\TagLab-main\source\NewDataset.py", line 20, in from pycocotools import mask as maskcoco ModuleNotFoundError: No module named 'pycocotools'

Did anyone found this happening also? How can I solve this problem?

I am trying to train a classifier for my images. I was able to export a training data set, but when I clicked on the robot to select my classifier the program crashed with the error below. Seems like there's a problem displaying the QtClassifierWidget due to missing keys.

Traceback (most recent call last):
  File "taglab.py", line 4420, in selectClassifier
    self.classifierWidget = QtClassifierWidget(self.available_classifiers, parent=self)
  File "C:\Program Files\TagLab-main\source\QtClassifierWidget.py", line 82, in __init__
    self.editClasses = QLineEdit(self.classes2str(classifiers[0]["Classes"]))
  File "C:\Program Files\TagLab-main\source\QtClassifierWidget.py", line 329, in classes2str
    for key in classes_dict.keys():
AttributeError: 'list' object has no attribute 'keys'

Hello,

I have been having trouble running TagLab today even though I have previously opened it before. I have uninstalled and reinstalled all the packages on my computer and in different Python environments. I have included the entire error message below. Is there anything I can do to get around this and run the program?

Thanks.

Traceback (most recent call last):
  File "/Users/jshao/Desktop/TagLab-main/TagLab.py", line 4578, in <module>
    tool = TagLab()
  File "/Users/jshao/Desktop/TagLab-main/TagLab.py", line 287, in __init__
    self.viewerplus = QtImageViewerPlus(self.taglab_dir)
  File "/Users/jshao/Desktop/TagLab-main/source/QtImageViewerPlus.py", line 128, in __init__
    self.tools = Tools(self)
  File "/Users/jshao/Desktop/TagLab-main/source/Tools.py", line 34, in __init__
    self.scribbles = Scribbles(self.scene)
  File "/Users/jshao/Desktop/TagLab-main/source/tools/Scribbles.py", line 32, in __init__
    self.setCustomCursor()
  File "/Users/jshao/Desktop/TagLab-main/source/tools/Scribbles.py", line 47, in setCustomCursor
    pxmap = QPixmap(cursor_size, cursor_size)
TypeError: arguments did not match any overloaded call:
  QPixmap(): too many arguments
  QPixmap(int, int): argument 1 has unexpected type 'float'
  QPixmap(QSize): argument 1 has unexpected type 'float'
  QPixmap(str, format: str = None, flags: Union[Qt.ImageConversionFlags, Qt.ImageConversionFlag] = Qt.ImageConversionFlag.AutoColor): argument 1 has unexpected type 'float'
  QPixmap(List[str]): argument 1 has unexpected type 'float'
  QPixmap(QPixmap): argument 1 has unexpected type 'float'
  QPixmap(Any): too many arguments

Hi! I'm working on some intertidal/underwater imagery at Universite Laval and have been having issues getting TagLab to run. I'm running it on Ubuntu 20.04.2 (downloaded on Windows 10) with Python 3.7.5 and NVCC 10.1. I'm running into issues with install.py where I cannot install wheel. But if I run pip3 install wheel, wheel is successfully installed. I'm wondering if it's a problem with my own system because I also have Python 3.8.5 installed but have Python 3.7.5 installed over it in a virtual environment and am running install.py with python3.7 install.py I just thought I would reach out and see if you guys had any insights to what was happening, thanks!

Found NVCC version: 10.1
Torch for CUDA 10.1
GDAL version installed: 3.0.4
Coraline built correctly.
WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available.
Collecting wheel
  WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/
  WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/
  WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/
  WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/
  WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/
  Could not fetch URL https://pypi.org/simple/wheel/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='pypi.org', port=443): Max retries exceeded with url: /simple/wheel/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping
  ERROR: Could not find a version that satisfies the requirement wheel (from versions: none)
ERROR: No matching distribution found for wheel
WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available.
Could not fetch URL https://pypi.org/simple/pip/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='pypi.org', port=443): Max retries exceeded with url: /simple/pip/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping
Traceback (most recent call last):
  File "install.py", line 164, in <module>
    subprocess.check_call([sys.executable, "-m", "pip", "install", package])
  File "/usr/local/lib/python3.7/subprocess.py", line 363, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/local/bin/python3.7', '-m', 'pip', 'install', 'wheel']' returned non-zero exit status 1.

If you run into an issue with Shapely after downloading and installing all of the requirements, uninstall the version of Shapely that you installed with the other packages using pip. Then install it with conda instead. If everything else installed correctly, you should be good.

Cheers.

Just got through the install script on an M1 Macbook and had to manually install a few of the items, as well as run in rosetta. The most glaring problem I ran into was line 232 of the install script...

# torch and torchvision subprocess.check_call([sys.executable, "-m", "pip", "install", torch_package, torchvision_package, 'torch_extra_argument1', 'torch_extra_argument2'])

I got an invalid argument '' error during the install. So I guess these variables aren't being assigned values for me. Since the M1 requires running the install in cpu mode I copy pasted the following parameters in place of the torch_extra_argument variables and finally got through this line.

"--extra-index-url", "https://download.pytorch.org/whl/cpu"

After updating from TagLab v2022.02.13 to TagLab v2022.02.24 the click based segmentation stopped working. GUI still switches between tools but no segmentation is performed. Also tested with currently latest version TagLab v2022.02.25, with same behaviour. Fixed by just rolling back to the previously working version.

Please let me know if you need more build/system info.

Before using TagLab we were manually tracing colonies using photoshop. I was testing importing these label images into TagLab so we don’t have to redo the work that we have already done, and possibly use these to create the training set for our monitoring sites. I have tried exporting the image labels as both png and jpg but the program crashes with error:

File "TagLab.py", line 3168, in importLabelMap
    created_blobs = self.activeviewer.annotations.import_label_map(filename, self.project.labels, self.activeviewer.img_map.width(),
  File "C:\Program Files\TagLab-main\source\Annotation.py", line 495, in import_label_map
    c = label.fill
AttributeError: 'str' object has no attribute ‘fill'

TagLab: 0.7 Windows: 10 Enterprise Python: 3.8.10 nvcc: 11.3.58

Hello. I'm a coral ecologist at the Hawaii Institute of Marine Biology trying out the TagLab project. I have managed to install the everything on my Mac, and it runs. However:

1. the GUI doesn't appear until I do something with the file menu (like "Load Map"); and
2. once the GUI appears I can click between text inputs, but I can't click buttons (e.g., "Cancel"), so I'm kind of stuck...

Notes: I have python 3.7.7 installed. In addition to your installation instructions, I had to install "albumentations" and a (seemingly known) Qt issue preventing the GUI to start meant that I had to take "opencv-python" back to version 4.1.2.30.

Right Click -> Select All in the Note edit box was triggering an error as it was notifying about a change on a non-existing object. A quickfix is to inspect activeviewer object in noteChanged(self) before querying for number of selected objects. If the object is empty (None) the just return

Another installation issue found.

Installation success, update for double check success. However after running the Taglab for the first time, the following comes out:

TagLab 2022.11.3 Traceback (most recent call last): File "taglab.py", line 4704, in tool = TagLab() File "taglab.py", line 437, in init self.labels_widget.setLabels(self.project, None) File "...source\QtTableLabel.py", line 240, in setLabels self.data = project.create_labels_table(self.activeImg) File "...source\Project.py", line 492, in create_labels_table 'Visibility': np.zeros(len(self.labels), dtype=np.int), File "...AppData\Local\Programs\Python\Python38\lib\site-packages\numpy_init_.py", line 284, in getattr raise AttributeError("module {!r} has no attribute " AttributeError: module 'numpy' has no attribute 'int'

Window 11 Python 3.8.0 NVCC 11.6

Anyway I can fix this issue?

Hi, I was creating a new dictionary for our lab and whenever I click into the boxes to define the RGB colors it displays an alert: "Please enter a number between 0 and 255". While a tooltip is helpful in this case, something is triggering it way too often making it hard to enter the data this way.

Hi,

I can no longer train a network. The error is in the picture below. I apologise for all the issues I'm posting but I am a PhD student and this program is meant to help me with some significant data analysis. Sometimes the training gets further sometimes it's shorter and sometimes it just doesn't work altogether. I would really appreciate the help.

Thanks, Chris

Hi there,

After the most recent update the 4- clicks segmentation has stopped working for me. I have attempted to reinstall taglab and sadly it hasn't solved the issue. The error code is what is shown in the terminal before python stops working.

Thanks, Chris

Hello! Really interested in using TagLab, it looks great!

I was wondering if there are any plans to develop a Docker File for running TagLab, and then just exposing the GUI from within a running Docker container? This might help with installation issues for users using different environments.