A minimal Python package that produces slice plots through h5m DAGMC geometry files

Related tags

Data Visualizationdagmc_geometry_slice_plotter
Overview

A minimal Python package that produces slice plots through h5m DAGMC geometry files

Installation

pip install dagmc_geometry_slice_plotter

Python API Usage

These examples assume you have a h5m file called dagmc.h5m in the same folder that the Python script is being run from.

Create a plot of a slice through the geometry perpendicular to the Z axis and default settings elsewhere. This will slice through the the center of the geometry as plane_origin has not been specified.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Z axis, offset by 200cm and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_origin=[0, 0, 200],
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Y axis, with a rotation of 45 degrees and with default settings elsewhere. Also saves the plot with a high resolution (DPI)

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 1, 0],
    rotate_plot=45,
)

plot.savefig('my_plot3.png', dpi=600)

dagmc slice plot

Saves a png image of a plot of a slice through the geometry perpendicular to the X axis and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal = [1, 0, 0],
    rotate_plot=270,
    output_filename='my_plot4.png'
)

dagmc slice plot

Related packages

This package is used by the regular_mesh_plotter Python package to combine slice plots with regular mesh tally results and produce images like below.

paramak plot openmc regular mesh tally

paramak plot openmc regular mesh tally

Comments
  • Some funky PyQT errors?

    Some funky PyQT errors?

    Pip installed and got the following error;

    ~/.local/lib/python3.10/site-packages/IPython/external/qt_loaders.py in load_qt(api_options)
    370         return result
    371     else:
--> 372         raise ImportError("""
    373     Could not load requested Qt binding. Please ensure that
    374     PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,

ImportError: 
    Could not load requested Qt binding. Please ensure that
    PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,
    and only one is imported per session.

    Currently-imported Qt library:                              'pyqt5'
    PyQt4 available (requires QtCore, QtGui, QtSvg):            False
    PyQt5 available (requires QtCore, QtGui, QtSvg, QtWidgets): False
    PySide >= 1.0.3 installed:                                  False
    PySide2 installed:                                          True
    Tried to load:

    But, I do have pyqt5 & PySide2 installed

    opened by makeclean 1
  • added single function that works for file or object

    added single function that works for file or object

    Adds a function called plot_slice_of_dagmc_geometry that can accept either a dagmc file name or a trimesh object and then produce a plot.

    This provides a single entry function for users

    opened by shimwell 1
  • adopted latest py packaging approach

    adopted latest py packaging approach

    A while back I updated this package from a setup.py to use a setup.cfg and a pyproject.toml.

    It is now possible to do everything in the pyproject.toml so this PR updates the packages

    opened by shimwell 0
  • remove internal plotting methods

    remove internal plotting methods

    returning the mplt object and then using the mplt savefig() method offers more flexibility then the built in function offers.

    We can remove the internal function and reduce the code base a bit while maintaining the same functionalilty

    opened by shimwell 0
  • adding ability to make animation

    adding ability to make animation

    It would be handy if the slicer can make an animation

    Perhaps it could accept a tuple for some of these inputs of plane_origin, plane_normal, rotate_plot and then make an animation that sweeps between the inputs.

    A nice tutorial on mpl animations can be found here https://brushingupscience.com/2016/06/21/matplotlib-animations-the-easy-way/

    opened by shimwell 0
  • setuptools_scm is required in setup.cfg

    setuptools_scm is required in setup.cfg

    I might have done something incorrect with the setup.cfg / pyprogject.toml as it appears necessary to add setuptools_scm to the setup.cfg file.

    Without this package the CI fails https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336107961?check_suite_focus=true

    With the package the CI passes https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336124187?check_suite_focus=true

    I tested the removal of this package in this PR https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14

    I'm just not sure why it setuptools_scm is needed as this is not the case for other packages I've translated to setup.cfg

    opened by shimwell 0
Releases(0.2.1)

  • 0.2.1(Dec 13, 2022)

    What's Changed

    • added axis labels by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/28

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.2.0...0.2.1

    Source code(tar.gz)
    Source code(zip)

  • 0.2.0(Dec 2, 2022)

    What's Changed

    • removed unused script by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/25
    • moved to src project layout by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/26
    • refactoring to allow axis aligned plots by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/27

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.3...0.2.0

    Source code(tar.gz)
    Source code(zip)

  • 0.1.3(Sep 29, 2022)

    What's Changed

    • removed packages that are installed by pyproject by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/22
    • added build back by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/23
    • added missing run cmd by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/24

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.2...0.1.3

    Source code(tar.gz)
    Source code(zip)

  • 0.1.2(Sep 29, 2022)

    What's Changed

    • adopted latest py packaging approach by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/20
    • updating package production by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/21

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.1...0.1.2

    Source code(tar.gz)
    Source code(zip)

  • 0.1.1(Mar 7, 2022)

    What's Changed

    • fixed typo in package name by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/19

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.0...0.1.1

    Source code(tar.gz)
    Source code(zip)

  • 0.1.0(Feb 25, 2022)

    What's Changed

    • updated to setup.cfg by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/13
    • Added more python versions to the testing by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14
    • removed output filename option by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/18

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/v0.0.5...0.1.0

    Source code(tar.gz)
    Source code(zip)
Owner
Fusion Energy
A collection of software projects related to fusion energy
Fusion Energy
GitHub Repository
Runtime analysis of code with plotting

Runtime analysis of code with plotting A quick comparison among Python, Cython, and the C languages A Programming Assignment regarding the Programming

Cena Ashoori 2 Dec 24, 2021
OpenStats is a library built on top of streamlit that extracts data from the Github API and shows the main KPIs

Open Stats Discover and share the KPIs of your OpenSource project. OpenStats is a library built on top of streamlit that extracts data from the Github

Pere Miquel Brull 4 Apr 03, 2022
Colormaps for astronomers

cmastro: colormaps for astronomers 🔭 This package contains custom colormaps that have been used in various astronomical applications, similar to cmoc

Adrian Price-Whelan 12 Oct 11, 2022
Python library that makes it easy for data scientists to create charts.

Chartify Chartify is a Python library that makes it easy for data scientists to create charts. Why use Chartify? Consistent input data format: Spend l

Spotify 3.2k Jan 04, 2023
Lumen provides a framework for visual analytics, which allows users to build data-driven dashboards from a simple yaml specification

Lumen project provides a framework for visual analytics, which allows users to build data-driven dashboards from a simple yaml specification

HoloViz 120 Jan 04, 2023
📊 Extensions for Matplotlib

📊 Extensions for Matplotlib

Nico Schlömer 519 Dec 30, 2022
A gui application to visualize various sorting algorithms using pure python.

Sorting Algorithm Visualizer A gui application to visualize various sorting algorithms using pure python. Language : Python 3 Libraries required Tkint

Rajarshi Banerjee 19 Nov 30, 2022
Tools for calculating and visualizing Elo-like ratings of MLB teams using Retosheet data

Overview This project uses historical baseball games data to calculate an Elo-like rating for MLB teams based on regular season match ups. The Elo rat

Lukas Owens 0 Aug 25, 2021
LinkedIn connections analyzer

LinkedIn Connections Analyzer 🔗 https://linkedin-analzyer.herokuapp.com Hey hey 👋 , welcome to my LinkedIn connections analyzer. I recently found ou

Okkar Min 5 Sep 13, 2022
This Crash Course will cover all you need to know to start using Plotly in your projects.

Plotly Crash Course This course was designed to help you get started using Plotly. If you ever felt like your data visualization skills could use an u

Fábio Neves 2 Aug 21, 2022
Simple plotting for Python. Python wrapper for D3xter - render charts in the browser with simple Python syntax.

PyDexter Simple plotting for Python. Python wrapper for D3xter - render charts in the browser with simple Python syntax. Setup $ pip install PyDexter

D3xter 31 Mar 06, 2021
A small script written in Python3 that generates a visual representation of the Mandelbrot set.

Mandelbrot Set Generator A small script written in Python3 that generates a visual representation of the Mandelbrot set. Abstract The colors in the ou

1 Dec 28, 2021
Smarthome Dashboard with Grafana & InfluxDB

Smarthome Dashboard with Grafana & InfluxDB This is a complete overhaul of my Raspberry Dashboard done with Flask. I switched from sqlite to InfluxDB

6 Oct 20, 2022
Plotting library for IPython/Jupyter notebooks

bqplot 2-D plotting library for Project Jupyter Introduction bqplot is a 2-D visualization system for Jupyter, based on the constructs of the Grammar

3.4k Dec 30, 2022
Wikipedia WordCloud App generate Wikipedia word cloud art created using python's streamlit, matplotlib, wikipedia and wordcloud packages

Wikipedia WordCloud App Wikipedia WordCloud App generate Wikipedia word cloud art created using python's streamlit, matplotlib, wikipedia and wordclou

Siva Prakash 5 Jan 02, 2022
Visualise top-rated GitHub repositories in a barchart by keyword

This python script was written for simple purpose -- to visualise top-rated GitHub repositories in a barchart by keyword. Script generates html-page with barchart and information about repository own

Cur1iosity 2 Feb 07, 2022
Cryptocurrency Centralized Exchange Visualization

This is a simple one that uses Grafina to visualize cryptocurrency from the Bitkub exchange. This service will make a request to the Bitkub API from your wallet and save the response to Postgresql. G

Popboon Mahachanawong 1 Nov 24, 2021
Fast scatter density plots for Matplotlib

About Plotting millions of points can be slow. Real slow... 😴 So why not use density maps? ⚡ The mpl-scatter-density mini-package provides functional

Thomas Robitaille 473 Dec 12, 2022
Fast visualization of radar_scenes based on oleschum/radar_scenes

RadarScenes Tools About This python package provides fast visualization for the RadarScenes dataset. The Open GL based visualizer is smoother than ole

Henrik Söderlund 2 Dec 09, 2021
Python package to Create, Read, Write, Edit, and Visualize GSFLOW models

pygsflow pyGSFLOW is a python package to Create, Read, Write, Edit, and Visualize GSFLOW models API Documentation pyGSFLOW API documentation can be fo

pyGSFLOW 21 Dec 14, 2022