Make sankey, alluvial and sankey bump plots in ggplot

Overview

ggsankey

The goal of ggsankey is to make beautiful sankey, alluvial and sankey bump plots in ggplot2

Installation

You can install the development version of ggsankey from github with:

# install.packages("devtools")
devtools::install_github("davidsjoberg/ggsankey")

How does it work

Google defines a sankey as:

A sankey diagram is a visualization used to depict a flow from one set of values to another. The things being connected are called nodes and the connections are called links. Sankeys are best used when you want to show a many-to-many mapping between two domains or multiple paths through a set of stages.

To plot a sankey diagram with ggsankey each observation has a stage (called a discrete x-value in ggplot) and be part of a node. Furthermore, each observation needs to have instructions of which node it will belong to in the next stage. See the image below for some clarification.

Hence, to use geom_sankey the aestethics x, next_x, node and next_node are required. The last stage should point to NA. The aestethics fill and color will affect both nodes and flows.

To controll geometries (not changed by data) like fill, color, size, alpha etc for nodes and flows you can either choose to set a global value that affect both, or you can specify which one you want to alter. For example node.color = 'black' will only draw a black line around the nodes, but not the flows (links).

Example

geom_sankey

A basic sankey plot that shows how dimensions are linked.

library(ggsankey)
library(dplyr)
library(ggplot2)

df <- mtcars %>%
  make_long(cyl, vs, am, gear, carb)

ggplot(df, aes(x = x, 
               next_x = next_x, 
               node = node, 
               next_node = next_node,
               fill = factor(node))) +
  geom_sankey()

And by adding a little pimp.

  • Labels with geom_sankey_label which places labels in the center of nodes if given the same aestethics.

  • ggsankey also comes with custom minimalistic themes that can be used. Here I use theme_sankey.

ggplot(df, aes(x = x, next_x = next_x, node = node, next_node = next_node, fill = factor(node), label = node)) +
  geom_sankey(flow.alpha = .6,
              node.color = "gray30") +
  geom_sankey_label(size = 3, color = "white", fill = "gray40") +
  scale_fill_viridis_d() +
  theme_sankey(base_size = 18) +
  labs(x = NULL) +
  theme(legend.position = "none",
        plot.title = element_text(hjust = .5)) +
  ggtitle("Car features")

geom_alluvial

Alluvial plots are very similiar to sankey plots but have no spaces between nodes and start at y = 0 instead being centered around the x-axis.

ggplot(df, aes(x = x, next_x = next_x, node = node, next_node = next_node, fill = factor(node), label = node)) +
  geom_alluvial(flow.alpha = .6) +
  geom_alluvial_text(size = 3, color = "white") +
  scale_fill_viridis_d() +
  theme_alluvial(base_size = 18) +
  labs(x = NULL) +
  theme(legend.position = "none",
        plot.title = element_text(hjust = .5)) +
  ggtitle("Car features")

geom_sankey_bump

Sankey bump plots is mix between bump plots and sankey and mostly useful for time series. When a group becomes larger than another it bumps above it.

# install.packages("gapminder")
library(gapminder)

df <- gapminder %>%
  group_by(continent, year) %>%
  summarise(gdp = (sum_(pop * gdpPercap)/1e9) %>% round(0), .groups = "keep") %>%
  ungroup()

ggplot(df, aes(x = year,
               node = continent,
               fill = continent,
               value = gdp)) +
  geom_sankey_bump(space = 0, type = "alluvial", color = "transparent", smooth = 6) +
  scale_fill_viridis_d(option = "A", alpha = .8) +
  theme_sankey_bump(base_size = 16) +
  labs(x = NULL,
       y = "GDP ($ bn)",
       fill = NULL,
       color = NULL) +
  theme(legend.position = "bottom") +
  labs(title = "GDP development per continent")

Owner
David Sjoberg
Happy R user. Twitter: @davsjob
David Sjoberg
This is a web application to visualize various famous technical indicators and stocks tickers from user

Visualizing Technical Indicators Using Python and Plotly. Currently facing issues hosting the application on heroku. As soon as I am able to I'll like

4 Aug 04, 2022
By default, networkx has problems with drawing self-loops in graphs.

By default, networkx has problems with drawing self-loops in graphs. It makes it hard to draw a graph with self-loops or to make a nicely looking chord diagram. This repository provides some code to

Vladimir Shitov 5 Jan 06, 2022
Python script to generate a visualization of various sorting algorithms, image or video.

sorting_algo_visualizer Python script to generate a visualization of various sorting algorithms, image or video.

146 Nov 12, 2022
plotly scatterplots which show molecule images on hover!

molplotly Plotly scatterplots which show molecule images on hovering over the datapoints! Required packages: pandas rdkit jupyter_dash ➡️ See example.

150 Dec 28, 2022
Info for The Great DataTas plot-a-thon

The Great DataTas plot-a-thon Datatas is organising a Data Visualisation competition: The Great DataTas plot-a-thon We will be using Tidy Tuesday data

2 Nov 21, 2021
Simple implementation of Self Organizing Maps (SOMs) with rectangular and hexagonal grid topologies

py-self-organizing-map Simple implementation of Self Organizing Maps (SOMs) with rectangular and hexagonal grid topologies. A SOM is a simple unsuperv

Jonas Grebe 1 Feb 10, 2022
A customized interface for single cell track visualisation based on pcnaDeep and napari.

pcnaDeep-napari A customized interface for single cell track visualisation based on pcnaDeep and napari. 👀 Under construction You can get test image

ChanLab 2 Nov 07, 2021
Fast 1D and 2D histogram functions in Python

About Sometimes you just want to compute simple 1D or 2D histograms with regular bins. Fast. No nonsense. Numpy's histogram functions are versatile, a

Thomas Robitaille 237 Dec 18, 2022
Matplotlib tutorial for beginner

matplotlib is probably the single most used Python package for 2D-graphics. It provides both a very quick way to visualize data from Python and publication-quality figures in many formats. We are goi

Nicolas P. Rougier 2.6k Dec 28, 2022
Python package that generates hardware pinout diagrams as SVG images

PinOut A Python package that generates hardware pinout diagrams as SVG images. The package is designed to be quite flexible and works well for general

336 Dec 20, 2022
2021 grafana arbitrary file read

2021_grafana_arbitrary_file_read base on pocsuite3 try 40 default plugins of grafana alertlist annolist barchart cloudwatch dashlist elasticsearch gra

ATpiu 5 Nov 09, 2022
AB-test-analyzer - Python class to perform AB test analysis

AB-test-analyzer Python class to perform AB test analysis Overview This repo con

13 Jul 16, 2022
Python script for writing text on github contribution chart.

Github Contribution Drawer Python script for writing text on github contribution chart. Requirements Python 3.X Getting Started Create repository Put

Steven 0 May 27, 2022
Schema validation just got Pythonic

Schema validation just got Pythonic schema is a library for validating Python data structures, such as those obtained from config-files, forms, extern

Vladimir Keleshev 2.7k Jan 06, 2023
CLAHE Contrast Limited Adaptive Histogram Equalization

A simple code to process images using contrast limited adaptive histogram equalization. Image processing is becoming a major part of data processig.

Happy N. Monday 4 May 18, 2022
Use Perspective to create the chart for the trader’s dashboard

Task Overview | Installation Instructions | Link to Module 3 Introduction Experience Technology at JP Morgan Chase Try out what real work is like in t

Abdulazeez Jimoh 1 Jan 22, 2022
Easily configurable, chart dashboards from any arbitrary API endpoint. JSON config only

Flask JSONDash Easily configurable, chart dashboards from any arbitrary API endpoint. JSON config only. Ready to go. This project is a flask blueprint

Chris Tabor 3.3k Dec 31, 2022
Create artistic visualisations with your exercise data (Python version)

strava_py Create artistic visualisations with your exercise data (Python version). This is a port of the R strava package to Python. Examples Facets A

Marcus Volz 53 Dec 28, 2022
Python wrapper for Synoptic Data API. Retrieve data from thousands of mesonet stations and networks. Returns JSON from Synoptic as Pandas DataFrame

☁ Synoptic API for Python (unofficial) The Synoptic Mesonet API (formerly MesoWest) gives you access to real-time and historical surface-based weather

Brian Blaylock 23 Jan 06, 2023
A programming language built on top of Python to easily allow Swahili speakers to get started with programming without ever knowing English

pyswahili A programming language built over Python to easily allow swahili speakers to get started with programming without ever knowing english pyswa

Jordan Kalebu 72 Dec 15, 2022