What is opy_Targets?

Opentargets.org uses GraphQL API to explore it's content via coding. This ensemble of functions aim is to make it easy to use the API via our beloved coding language - python <3

Python dependencies

(requires Python 3)

• pandas
• requests
• json

Usage

Example:

Lets say you want to get SNPS of gene you think is related to a disease

import opy_targets as opy

ENDOMETRIOSIS_EFO_ID = 'EFO_0001065'
SNP_ESNG_ID = ENSG00000196208

opy.get_snp_data(SNP_ESNG_ID,ENDOMETRIOSIS_ID).head(4)

output:

Most of the chances you don't know the genes related to the disease. NO PROBLEM!

Lets say you want to know which SNP associate with a disease you study

import opy_targets as opy

#

ENDOMETRIOSIS_EFO_ID = 'EFO_0001065'

opy.get_SNP_df(ENDOMETRIOSIS_ID).head()

output:

You can change parameters such as the amount of genes retrived for each disease (25 default) and the sorting method of them (genetic association). check the functions docstring.

Enjoy ;)