Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional 
Neural Networks and 3D Conditional Random Fields

sudo GPU=0 nvidia-docker run -v $(pwd):/data -P --net=host --workdir=/Cascaded-FCN -ti --privileged patrickchrist/cascadedfcn bash

jupyter notebook

@Inbook{Christ2016,
title="Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields",
author="Christ, Patrick Ferdinand and Elshaer, Mohamed Ezzeldin A. and Ettlinger, Florian and Tatavarty, Sunil and Bickel, Marc and Bilic, Patrick and Rempfler, Markus and Armbruster, Marco and Hofmann, Felix and D'Anastasi, Melvin and Sommer, Wieland H. and Ahmadi, Seyed-Ahmad and Menze, Bjoern H.",
editor="Ourselin, Sebastien and Joskowicz, Leo and Sabuncu, Mert R. and Unal, Gozde and Wells, William",
bookTitle="Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part II",
year="2016",
publisher="Springer International Publishing",
address="Cham",
pages="415--423",
isbn="978-3-319-46723-8",
doi="10.1007/978-3-319-46723-8_48",
url="http://dx.doi.org/10.1007/978-3-319-46723-8_48"
}

@ARTICLE{2017arXiv170205970C,
   author = {{Christ}, P.~F. and {Ettlinger}, F. and {Gr{\"u}n}, F. and {Elshaera}, M.~E.~A. and 
	{Lipkova}, J. and {Schlecht}, S. and {Ahmaddy}, F. and {Tatavarty}, S. and 
	{Bickel}, M. and {Bilic}, P. and {Rempfler}, M. and {Hofmann}, F. and 
	{Anastasi}, M.~D and {Ahmadi}, S.-A. and {Kaissis}, G. and {Holch}, J. and 
	{Sommer}, W. and {Braren}, R. and {Heinemann}, V. and {Menze}, B.},
    title = "{Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks}",
  journal = {ArXiv e-prints},
archivePrefix = "arXiv",
   eprint = {1702.05970},
 primaryClass = "cs.CV",
 keywords = {Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence},
     year = 2017,
}

@inproceedings{Christ2017SurvivalNetPP,
  title={SurvivalNet: Predicting patient survival from diffusion weighted magnetic resonance images using cascaded fully convolutional and 3D convolutional neural networks},
  author={Patrick Ferdinand Christ and Florian Ettlinger and Georgios Kaissis and Sebastian Schlecht and Freba Ahmaddy and Felix Gr{\"{u}n and Alexander Valentinitsch and Seyed-Ahmad Ahmadi and Rickmer Braren and Bjoern H. Menze},
  booktitle={ISBI},
  year={2017}
}